{"schemaVersion":1,"generatedAt":"2026-07-20T09:39:07.064Z","asOf":"2026-07-20","license":"Compiled aggregate counts (facts) re-served by SeqDesk under each source's terms; CC-BY for UniProt & AlphaFold. See https://seqdesk.org/data for full source list & licensing. Provided as-is, no warranty.","categories":{"sequence-archives":"Sequence archives","structures-proteins":"Structures & proteins","datasets-dois":"Datasets, DOIs & repositories","omics-specialized":"Omics & specialized archives","standards-vocab":"Standards & vocabularies","fair-literature":"FAIR adoption & literature","earth-environment":"Earth & environment","physics-materials":"Physics, space & materials","chemistry-compounds":"Chemistry & compounds","biodiversity":"Biodiversity & specimens","clinical-biomed":"Clinical & biomedical","open-data":"Open data & repositories","metadata-completeness":"Metadata & completeness","sequencing-technology":"Sequencing technology"},"licensing":{"summary":"Figures here are compiled aggregate counts — single totals updated weekly from public archives and cached by SeqDesk. They are facts, not reproductions of the underlying records. Each carries its source and retrieval date and is provided “as is” with no warranty. SeqDesk is independent and not endorsed by any listed organization.","providers":[{"name":"NCBI / U.S. National Library of Medicine","scope":"SRA, GenBank, RefSeq, ClinVar, dbSNP, Taxonomy, NCBI Datasets, NCBI Virus, GEO","license":"US-gov public domain · no use/distribution restrictions","url":"https://www.ncbi.nlm.nih.gov/home/about/policies/"},{"name":"EMBL-EBI","scope":"ENA, BioSamples, BioStudies/ArrayExpress, Europe PMC, MGnify, OLS/ENVO, ENA checklists","license":"EMBL-EBI Terms of Use · CC0-aligned","url":"https://www.ebi.ac.uk/about/terms-of-use/"},{"name":"UniProt Consortium","scope":"UniProtKB, Swiss-Prot, TrEMBL, InterPro, Pfam","license":"CC BY 4.0 (attribution required)","url":"https://creativecommons.org/licenses/by/4.0/"},{"name":"RCSB PDB / wwPDB","scope":"released structures","license":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},{"name":"AlphaFold DB (Google DeepMind / EMBL-EBI)","scope":"predicted structures","license":"CC BY 4.0 (attribution required)","url":"https://creativecommons.org/licenses/by/4.0/"},{"name":"OpenAlex (OurResearch)","scope":"works, dataset works, FAIR-paper citations","license":"CC0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},{"name":"DataCite & Crossref","scope":"dataset DOIs, total DOIs","license":"CC0 (metadata)","url":"https://datacite.org/"},{"name":"Zenodo · OSF · Dryad · re3data","scope":"records, projects, datasets, repositories","license":"open terms · counts are facts","url":"https://zenodo.org/"},{"name":"bioRxiv/medRxiv · OBO Foundry · GSC MIxS","scope":"preprints, ontologies, MIxS terms","license":"open / CC","url":"https://www.biorxiv.org/"},{"name":"GBIF · OBIS · iNaturalist","scope":"biodiversity occurrences, datasets, observations","license":"CC0 / CC BY per record · counts are facts","url":"https://www.gbif.org/terms"},{"name":"NCBI PubChem · ClinicalTrials.gov (NLM)","scope":"compounds, substances, bioassays, registered trials & results","license":"US-gov public domain","url":"https://www.ncbi.nlm.nih.gov/home/about/policies/"},{"name":"CDS Strasbourg · ESA Gaia · NASA/IPAC","scope":"SIMBAD, VizieR, Gaia DR3, Exoplanet Archive, EOSDIS CMR","license":"CC BY 4.0 / Gaia licence / US-gov open","url":"https://cds.unistra.fr/"},{"name":"CERN (Open Data · INSPIRE-HEP)","scope":"physics records & open datasets","license":"CC0 / open","url":"https://opendata.cern.ch/"},{"name":"Materials Project · OQMD · NOMAD","scope":"computational materials (OPTIMADE)","license":"CC BY 4.0","url":"https://materialsproject.org/about/terms"},{"name":"PANGAEA · ESGF (WCRP CMIP6)","scope":"Earth & climate datasets","license":"CC BY (per dataset)","url":"https://www.pangaea.de/"},{"name":"EMBL-EBI ChEMBL · ChEBI · GWAS Catalog · ENCODE · NeuroMorpho.Org","scope":"chemistry, ontologies, associations, experiments, neuron morphologies","license":"CC BY / open","url":"https://www.ebi.ac.uk/about/terms-of-use/"},{"name":"Harvard Dataverse · figshare · data.europa.eu · World Bank","scope":"cross-domain datasets & development indicators","license":"open terms · counts are facts","url":"https://dataverse.harvard.edu/"},{"name":"NHGRI (National Human Genome Research Institute)","scope":"DNA sequencing cost data (cost per genome, cost per Mb)","license":"U.S. Government work / public domain (cite NHGRI)","url":"https://www.genome.gov/about-genomics/fact-sheets/DNA-Sequencing-Costs-Data"}]},"count":1,"metrics":[{"id":"ena-read-run","label":"ENA raw read datasets","category":"sequence-archives","source":"EMBL-EBI / European Nucleotide Archive","unit":"runs","tier":"flagship","flagship":true,"cadence":"weekly","scale":"linear","fetch":{"url":"https://www.ebi.ac.uk/ena/portal/api/count?result=read_run&format=json","method":"GET","parse":{"type":"json","path":"count","cast":"int"},"auto":true,"appendPolicy":"always"},"release":null,"series":[["2022-01-01",22000000],["2023-01-01",28000000],["2024-01-01",32000000],["2025-01-01",37000000],["2026-06-24",42613406],["2026-07-06",42834140],["2026-07-13",42924583],["2026-07-20",43021658]],"note":"Each record is one submitted sequencing run. Cumulative; only goes up.","events":[{"date":"2007-01-01","label":"SRA launched","detail":"NCBI established the Sequence Read Archive in 2007 as the first public repository for raw next-generation sequencing reads, the foundation later mirrored by ENA/EBI."},{"date":"2007-01-01","label":"Illumina NGS arrives","detail":"Solexa's Genome Analyzer (acquired by Illumina in 2007) brought gigabase-scale short-read sequencing to market, triggering the explosive growth in submitted read data."},{"date":"2008-01-01","label":"1000 Genomes Project","detail":"Launched in January 2008, this international effort to catalogue human variation drove a large early wave of high-coverage read submissions to public archives."},{"date":"2015-05-01","label":"Nanopore MinION","detail":"Oxford Nanopore's portable MinION became commercially available in May 2015, adding real-time long-read sequencing to the data deposited in ENA/SRA."},{"date":"2020-01-10","label":"SARS-CoV-2 genome","detail":"The first SARS-CoV-2 genome (Wuhan-Hu-1) was shared publicly on 10-11 January 2020, kicking off the largest pathogen-sequencing surge ever recorded in the archives."}]}]}