Pipeline Store
Browse study-scale analysis workflows and order-scoped sequencing utilities available in SeqDesk.
Pipeline Store
Study pipelines run across complete studies, while sequencing order pipelines operate on individual sequencing order samples and their linked sequencing files.
Study pipelines run across a whole study and combine multiple samples for larger analysis, reporting, and data upload or submission workflows.
nf-core/mag
Metagenome assembly, binning, and QC in one workflow.
reads-qc
Compute per-sample FASTQ statistics and an HTML quality overview.
submg
Prepare and submit reads, assemblies, and bins to ENA.
MetaxPath
Private long-read pathogen profiling workflow.