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ENA SubmissionOverview

ENA Submission

SeqDesk automates submission of sequencing data and metadata to the European Nucleotide Archive (ENA). It generates the required XML, validates metadata against MIxS checklists, and tracks accession numbers.

Preparing a SubmissionValidation requirements, required MIxS fields, and common issues.Submitting to ENAStudy/sample XML registration and the submg pipeline for reads, assemblies, and bins.Troubleshooting ENACommon errors, missing taxIds, connection issues, and re-submission.

ENA credentials must be configured before submission. See Administration → ENA Credentials.